First of all - thanks for developing Shapeworks. It looks like a great piece of software that will be very useful in many fields.
After having gone through the examples, I started playing around with my own data (MRI data of muscles) in Shapeworks Studio. Following the ‘ellipsoid’ example, I placed a set of binary masks in a folder and adjusted the Excel-file to the corresponding filenames. I managed to open the data in Shapeworks Studio but got stuck in the Grooming phase when rigidly aligning my shapes. If I select the option ‘Center’ I end up without any results: no groomed shapes are generated and the distance maps are empty. I’m thinking it might have something to do with the header information in my NDDR files, but the files open in the correct coordinate system in other software (e.g. ITK-SNAP).
Any ideas on how to resolve this issue?
Thanks in advance.